Owehn: I too am a math student. I find equations written in my note books all the time. Historically, looking through the notes of others has also given us random equations, even in non-mathematical notes. Fermat's Last, for example, was found in the margin of one of his notebooks.
Bases are important primarily in number theory/numerical analysis. However, as you correctly point out, analysis does not specify a base.
The 'extrapolation of Greek science' may mean nothing to you as you probably have not studied any classics:
The Greek veiw of mathematics is reflected very heavily in there society. Namely their architecture and economics. They conceived of numbers as descriptive words applied to quantities of items as opposed to entities in and of themselves. The prevailing thought amoung Greek mathematicians was that any quantity could be expressed as either a number or as the ratio of two numbers. A ration is not quite a fraction as a fraction stands alone and in Greek mathematics a number by itself was meaningless. Greeks had a very decent understanding of geometry, as apparent in some of their architecture. The drafting constructions (constructions using only a straight edge and a compass) that we have today were contributions of the Greeks. (Although they left puzzles which we later solved with more advanced techiniques such as the infamous trisection of an angle.)
Quite possibly their most well known contribution deals with the sides of a right triangle: a^2+b^2=c^2. However this theorem yeilded a fatal inconsistancy in their thinking. An isosoles right triangle with legs of measurement 1 had a hypontenuse of measurement 2^(1/2). As a student of mathematics you are well aware that this quantity cannot be expressed as a ratio between two counting numbers. Soon after this discovery 3^(1/2), 5^(1/2)... were added to the mix. Then came the cubic roots and roots of n. Patterned numbers (.565565556...) were added. As modern mathematicians we take these numbers for granted, as Greek mathematicians they were dumbfounded. By in large, however, the idea that all quantities could be expressed as ratios remained prevalent as it had already proven to work in the real world.
In addition the Greeks did not have a concept of a negative number. It was a big enough leap to say that there were 0 of some object. It was too far for them to say that there were less than 0 of some object. This might be something of a saving grace for them, actually. If they couldn't find a ratio to represent an irrational number, imagine them finding a ratio to express an imaginary number.
Pi was mentioned before as an irrational that has been in use for quite a while. Pi is humanity's attempt to 'square the circle.' Sadly it can't be done, but we do need approximates. The Greeks were able to determine the existance of Pi by defining it as the ratio between the length of the diameter and the length of the circumference. Using very precision instruments they were able to calculate Pi well enough. Hell, even the most anal of NASA minds don't use more than 15 digits of Pi. However, Pi mysteriously springs up in so many other places.
The big equation is: e^(i*Pi) + 1 = 0. You don't get this from measurement.
Why do I believe the D'ni had a similar veiw of math as the Greeks? It fits into the society. Their major acheivement is through general description, not mind numbing precision. Their theory only needed to take them as far as their saws and pens could. Hell, a lot of their architecture is even reminicent of classical or Gothic styles. Most importantly it fills plot holes. It explains why we have come across feats of engineering, architecture, chemistry, and many other sciences, but have never once seen notation for anything in mathematics. It explains why most the machinery we experience has a hand crafted feel and at times looks like a highly tested Rube Goldberg device. It explains why we don't find any notes about the speed of light or such among the D'ni ruins. It explains the question of the original post. It fits as to explain Yeesha's natural talents and why she can go so far beyond past D'ni. Finally we haven't seen anything directly to the contrary (yet).
As one (hopefully) final example I will cite the proof of 1 > 0. If a is not 0 then either a is a postive number or -a is a positive number. Then a^2 is either (a)(a) or (-a)(-a) which are both positive numbers. If we let a = 1 then a^2 > 0 becomes 1^2 = 1 > 0. To most non-math people this proof seems pointless. After explaining it to one friend she smuggly replied that she had a more elegant proof. "There are no objects in my hand, if I increase that number of objects I now have one object in my hand. Thus 1 is greater than 0." For the D'ni, the latter was proof enough.